Basic Information
Locus ID:
COCNU_07G012690
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RNA polymerase II C-terminal domain phosphatase-like 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 43551664 | 43571042 | - | COCNU_07G012690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 104,785.72 Da | 54.00 | 77.56 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 169 | 277 | 4.0E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 757 | 817 | 3.7E-4 | IPR014720 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 629 | 680 | 5.4E-6 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 619 | 683 | 8.6E-11 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 754 | 828 | 2.98E-11 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 48 | 284 | 1.9E-19 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 49 | 309 | 3.1E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 637 | 700 | 8.1E-8 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 752 | 839 | 9.2E-7 | - |
| SMART | SM00577 | forpap2 | 114 | 288 | 1.6E-15 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 753 | 821 | 1.0E-4 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 619 | 683 | 9.6E-10 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 53 | 304 | 15.393811 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 752 | 822 | 10.848671 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 618 | 684 | 11.407024 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 466 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_010918441.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Elaeis guineensis] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IGP4 | protein-serine/threonine phosphatase OS=Cocos nucifera OX=13894 GN=COCNU_07G012690 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology