Basic Information
Locus ID:
COCNU_07G009700
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 29237925 | 29241026 | + | COCNU_07G009700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 36,415.75 Da | 51.84 | 54.65 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 192 | 235 | 1.2E-7 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 240 | 298 | 6.7E-27 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 57 | 138 | 1.1E-18 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 191 | 241 | 4.71E-10 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 52 | 128 | 4.32E-17 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 129 | 186 | 8.63E-18 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 264 | 304 | 1.9E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 185 | 256 | 9.0E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 193 | 235 | 3.4E-7 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 50 | 126 | 25.682692 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 128 | 192 | 33.675102 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 193 | 236 | 12.076194 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_029119808.1 | E3 ubiquitin-protein ligase RZFP34 [Elaeis guineensis] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N503 | E3 ubiquitin-protein ligase RZFP34 OS=Cocos nucifera OX=13894 GN=COCNU_07G009700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology