Basic Information
Locus ID:
COCNU_07G009110
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 26832165 | 26839127 | + | COCNU_07G009110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 134,525.45 Da | 41.94 | 105.52 | 0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 310 | 597 | 3.01084E-108 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 623 | 823 | 3.52562E-106 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 942 | 1197 | 9.84256E-79 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 945 | 1185 | 2.6E-27 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 312 | 577 | 3.0E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 641 | 775 | 2.8E-19 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 618 | 845 | 4.26E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 300 | 605 | 3.53E-38 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 929 | 1195 | 4.05E-43 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 617 | 851 | 1.9E-72 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 903 | 1198 | 2.4E-51 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 280 | 606 | 1.9E-53 | IPR036640 |
| SMART | SM00382 | AAA_5 | 650 | 831 | 5.0E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 623 | 846 | 22.642498 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 312 | 589 | 37.623001 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 944 | 1187 | 33.519779 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 748 | 762 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 883 | 917 | - | - |
| Coils | Coil | Coil | 896 | 919 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_019705688.1 | ABC transporter C family member 5 isoform X1 [Elaeis guineensis] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0N5J1 | ABC transporter C family member 5 OS=Cocos nucifera OX=13894 GN=COCNU_07G009110 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology