Basic Information
Locus ID:
COCNU_07G009010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 26613213 | 26626883 | + | COCNU_07G009010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 61,084.79 Da | 45.61 | 89.17 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 235 | 531 | 1.04659E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 281 | 315 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 453 | 488 | 0.021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 494 | 531 | 3.6E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 234 | 270 | 2.4E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 230 | 531 | 1.26E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 222 | 534 | 1.7E-62 | IPR015943 |
| SMART | SM00320 | WD40_4 | 447 | 489 | 0.34 | IPR001680 |
| SMART | SM00667 | Lish | 39 | 71 | 0.0057 | IPR006594 |
| SMART | SM00320 | WD40_4 | 232 | 271 | 8.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 363 | 403 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 361 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 405 | 443 | 430.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 277 | 316 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 492 | 532 | 9.8E-10 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 499 | 531 | 11.761044 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 284 | 320 | 10.416506 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 239 | 273 | 9.441055 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 499 | 531 | 14.217871 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 284 | 325 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 239 | 280 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 39 | 71 | 9.156058 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_010918959.1 | WD repeat-containing protein WDS homolog [Elaeis guineensis] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IFS8 | WD repeat-containing protein WDS OS=Cocos nucifera OX=13894 GN=COCNU_07G009010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology