Basic Information
Locus ID:
COCNU_07G008830
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
NTMC2T4.1
Description:
ntmc2t4,ntmc2type4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 26082183 | 26116882 | + | COCNU_07G008830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 54,155.38 Da | 22.62 | 105.35 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 248 | 343 | 4.87329E-27 | - |
| Pfam | PF00168 | C2 domain | 246 | 343 | 1.7E-22 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 69 | 230 | 5.3E-12 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 244 | 375 | 9.82E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 230 | 401 | 2.1E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 247 | 345 | 2.0E-18 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 229 | 348 | 20.662346 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 43 | 231 | 19.013451 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 288 | 301 | 7.0E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 263 | 275 | 7.0E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 310 | 318 | 7.0E-5 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 505 | - | - |
| Coils | Coil | Coil | 381 | 401 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_010918986.1 | synaptotagmin-5 [Elaeis guineensis] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N532 | Synaptotagmin-5 OS=Cocos nucifera OX=13894 GN=COCNU_07G008830 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology