Basic Information
Locus ID:
COCNU_07G007840
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
MADS-box transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 22415887 | 22417553 | + | COCNU_07G007840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 16,567.47 Da | 73.38 | 76.33 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01486 | K-box region | 14 | 102 | 3.6E-25 | IPR002487 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 17 | 109 | 13.952983 | IPR002487 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 23 | - | - |
| Coils | Coil | Coil | 73 | 100 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_010919081.1 | MADS-box transcription factor 50 isoform X2 [Elaeis guineensis] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IFG1 | AGL20-like MADS box transcription factor OS=Cocos nucifera OX=13894 GN=COCNU_07G007840 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology