Basic Information
Locus ID:
COCNU_07G007820
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Agamous-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 22307868 | 22308457 | + | COCNU_07G007820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.35 | 13,217.41 Da | 44.01 | 99.05 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 65 | 1.48693E-39 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 9.0E-28 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 61 | 9.94E-30 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 68 | 4.8E-26 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 5.8E-42 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.945232 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.6E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.6E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.6E-31 | IPR002100 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11880.2 | - | 0 |
| RefSeq | XP_018681699.1 | PREDICTED: agamous-like MADS-box protein AGL14 [Musa acuminata subsp. malaccensis] | 0 |
| Q38838 | Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana OX=3702 GN=AGL14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0IEX8 | Putative Agamous-like MADS-box protein AGL14 OS=Cocos nucifera OX=13894 GN=COCNU_07G007820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology