Basic Information
Locus ID:
COCNU_07G007780
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 22019986 | 22031502 | - | COCNU_07G007780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 46,742.05 Da | 48.95 | 74.99 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 239 | 274 | 1.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 279 | 319 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 368 | 404 | 1.4E-5 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 161 | 215 | 7.0E-5 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 107 | 412 | 3.97E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 100 | 409 | 1.1E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 151 | 191 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 107 | 148 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 194 | 231 | 0.87 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 274 | 4.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 404 | 3.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 277 | 319 | 0.0017 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 242 | 274 | 10.917412 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 372 | 405 | 11.761044 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 372 | 405 | 14.217871 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 159 | 200 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 242 | 283 | 13.516088 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 391 | 405 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 63 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 0 |
| RefSeq | XP_010919086.1 | protein FIZZY-RELATED 1 [Elaeis guineensis] | 0 |
| Q9M7I2 | B-type cell cycle switch protein ccs52A OS=Medicago truncatula OX=3880 GN=CCS52A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N4Z6 | Protein FIZZY-RELATED 2 OS=Cocos nucifera OX=13894 GN=COCNU_07G007780 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology