Basic Information
Locus ID:
COCNU_07G007610
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 21344997 | 21346342 | - | COCNU_07G007610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 43,724.97 Da | 43.60 | 79.49 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 230 | 275 | 5.6E-11 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 115 | 160 | 3.2E-12 | IPR025610 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 36 | 87 | 1.2E-7 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 226 | 293 | 6.67E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 223 | 292 | 1.1E-17 | IPR036638 |
| SMART | SM00353 | finulus | 232 | 281 | 1.1E-15 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 226 | 275 | 16.710413 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 321 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 224 | - | - |
| Coils | Coil | Coil | 265 | 299 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00870.1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein. | 0 |
| RefSeq | XP_010910582.1 | transcription factor MYC3 [Elaeis guineensis] | 0 |
| O23090 | Transcription factor bHLH14 OS=Arabidopsis thaliana OX=3702 GN=BHLH14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N5E2 | Transcription factor MYC3 OS=Cocos nucifera OX=13894 GN=COCNU_07G007610 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology