HalophFGD

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Basic Information
Locus ID: COCNU_07G007240
Species & Taxonomic ID: Cocos nucifera & 13894
Genome Assembly: GCA_008124465.1
Description: Zinc finger CCCH domain-containing protein
Maps and Mapping Data
Chromosome Start End Strand ID
chr7 20181328 20205354 - COCNU_07G007240
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.91 13,162.65 Da 17.75 57.97 -0.67
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
ProSiteProfiles PS50103 Zinc finger C3H1-type profile. 29 55 9.460083 IPR000571
Gene Ontology
Molecular Function:
GO:0046872 (metal ion binding)
KEGG Pathway
KO Term:
K10260 (F-box and WD-40 domain protein 7)
Pathway:
ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G51980.1 Transducin/WD40 repeat-like superfamily protein. 0
RefSeq XP_008795362.2 LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 17-like [Phoenix dactylifera] 0
Swiss-Prot Q9FNZ1 Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana OX=3702 GN=ZFWD2 PE=2 SV=1 0
TrEMBL A0A8K0IFB4 C3H1-type domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_07G007240 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 4 jg10154, jg14043, jg2340, jg29301
Aizoaceae Mesembryanthemum crystallinum 2 gene_1388, gene_3174
Amaranthaceae Atriplex hortensis 2 Ah018984, Ah031355
Amaranthaceae Beta vulgaris 2 BVRB_8g191380, BVRB_8g191390
Amaranthaceae Salicornia bigelovii 2 Sbi_jg15485, Sbi_jg56296
Amaranthaceae Salicornia europaea 1 Seu_jg26761
Amaranthaceae Suaeda aralocaspica 2 GOSA_00006608, GOSA_00008943
Amaranthaceae Suaeda glauca 4 Sgl02069, Sgl07222, Sgl74130, Sgl77645
Amaranthaceae Chenopodium album 5 gene:ENSEOMG00000000705, gene:ENSEOMG00000004802 ...
gene:ENSEOMG00000028815, gene:ENSEOMG00000040014, gene:ENSEOMG00000046367
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.3AG0002180, CQ.Regalona.r1.3BG0002300 ...
CQ.Regalona.r1.7AG0021940, CQ.Regalona.r1.7BG0024510
Anacardiaceae Pistacia vera 2 pistato.v30003610, pistato.v30182120
Apiaceae Apium graveolens 4 Ag10G00202, Ag2G01960, Ag4G01742, Ag8G00755
Arecaceae Cocos nucifera 2 COCNU_07G007240, scaffold000778G000030
Arecaceae Phoenix dactylifera 1 gene-LOC103711123
Asparagaceae Asparagus officinalis 8 AsparagusV1_01.3628.V1.1, AsparagusV1_04.2108.V1.1 ...
AsparagusV1_04.2986.V1.1, AsparagusV1_04.2990.V1.1, AsparagusV1_08.2958.V1.1, AsparagusV1_09.778.V1.1, AsparagusV1_10.997.V1.1, AsparagusV1_10.998.V1.1
Asteraceae Flaveria trinervia 4 Ftri12G31744, Ftri8G33145, Ftri9G00006, FtriNA05352
Brassicaceae Arabidopsis thaliana 4 AT4G25440.1, AT5G40880.1, AT5G49200.1, AT5G51980.2
Brassicaceae Eutrema salsugineum 4 Thhalv10013582m.g.v1.0, Thhalv10025269m.g.v1.0 ...
Thhalv10027743m.g.v1.0, Thhalv10027745m.g.v1.0
Brassicaceae Schrenkiella parvula 3 Sp6g14230.v2.2, Sp7g01600.v2.2, Sp7g23490.v2.2
Brassicaceae Brassica nigra 8 BniB01g026530.2N, BniB01g026590.2N, BniB02g029520.2N ...
BniB02g029960.2N, BniB03g040680.2N, BniB03g053290.2N, BniB05g011810.2N, BniB08g017560.2N
Casuarinaceae Casuarina equisetifolia 16 Ceq01G1037, Ceq01G1048, Ceq01G1534, Ceq02G1793, Ceq02G2070 ...
Ceq04G1031, Ceq04G1039, Ceq04G1042, Ceq04G1051, Ceq05G2127, Ceq08G1499, Ceq08G1617, Ceq08G1639, Ceq08G1643, Ceq08G1752, Ceq09G1260
Casuarinaceae Casuarina glauca 21 Cgl01G1150, Cgl01G1209, Cgl01G1220, Cgl01G1699, Cgl02G1853 ...
Cgl02G1865, Cgl02G2141, Cgl04G1117, Cgl04G1171, Cgl04G1180, Cgl05G2188, Cgl05G2190, Cgl05G2209, Cgl08G1478, Cgl08G1531, Cgl08G1656, Cgl08G1680, Cgl08G1683, Cgl08G1690, Cgl08G1788, Cgl09G1348
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno14g01870, gene.Cymno14g01880
Dunaliellaceae Dunaliella salina 1 Dusal.0698s00001.v1.0
Hydrocharitaceae Thalassia testudinum 3 gene.Thate03g11440, gene.Thate08g03670, gene.Thate08g03720
Nitrariaceae Nitraria sibirica 5 evm.TU.LG01.2214, evm.TU.LG04.955, evm.TU.LG04.961 ...
evm.TU.LG04.963, evm.TU.LG04.964
Plantaginaceae Plantago ovata 5 Pov_00019507, Pov_00028600, Pov_00028769, Pov_00035026 ...
Pov_00040895
Plumbaginaceae Limonium bicolor 2 Lb1G04398, Lb1G04431
Poaceae Echinochloa crus-galli 9 AH01.5287, AH02.353, AH05.3464, AH07.2993, BH02.379 ...
BH07.2816, CH01.5523, CH02.418, CH07.2896
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_1BG0061370, gene-QOZ80_1BG0061390 ...
gene-QOZ80_2AG0140780, gene-QOZ80_2BG0196390
Poaceae Hordeum vulgare 3 HORVU.MOREX.r3.3HG0236950.1, HORVU.MOREX.r3.6HG0603760.2 ...
HORVU.MOREX.r3.4HG0407530.1.CDS1
Poaceae Lolium multiflorum 8 gene-QYE76_000717, gene-QYE76_008723, gene-QYE76_024346 ...
gene-QYE76_048188, gene-QYE76_050198, gene-QYE76_050733, gene-QYE76_068993, gene-QYE76_070820
Poaceae Oryza coarctata 6 Oco01G003770, Oco02G003840, Oco03G018100, Oco04G018850 ...
Oco05G002780, Oco06G002760
Poaceae Oryza sativa 5 LOC_Os01g09252.1, LOC_Os02g45480.1, LOC_Os03g05210.1 ...
LOC_Os03g05250.1, LOC_Os04g48375.1
Poaceae Paspalum vaginatum 2 gene-BS78_03G034600, gene-BS78_04G240500
Poaceae Puccinellia tenuiflora 9 Pt_Chr0100064, Pt_Chr0100084, Pt_Chr0200021, Pt_Chr0203712 ...
Pt_Chr0206594, Pt_Chr0403282, Pt_Chr0405571, Pt_Chr0603331, Pt_Chr0700307
Poaceae Sporobolus alterniflorus 7 Chr02G020610, Chr03G006120, Chr03G006130, Chr03G006140 ...
Chr06G005140, Chr09G023570, Chr15G006720
Poaceae Thinopyrum elongatum 3 Tel3E01G189800, Tel4E01G515900, Tel6E01G478600
Poaceae Triticum dicoccoides 6 gene_TRIDC3AG013470, gene_TRIDC3BG018020 ...
gene_TRIDC4AG055630, gene_TRIDC4BG052810, gene_TRIDC6AG039630, gene_TRIDC6BG046540
Poaceae Triticum aestivum 8 TraesCS3A02G109600.1, TraesCS3D02G111400.1 ...
TraesCS4A02G410400.1.cds1, TraesCS4B02G310500.1.cds1, TraesCS4D02G308400.1.cds1, TraesCS6A02G257200.1, TraesCS6B02G267900.1, TraesCS6D02G238400.3
Poaceae Zea mays 3 Zm00001eb088450_P001, Zm00001eb121510_P001 ...
Zm00001eb250580_P003
Poaceae Zoysia japonica 5 nbis-gene-22274, nbis-gene-36001, nbis-gene-6562 ...
nbis-gene-6565, nbis-gene-9161
Poaceae Zoysia macrostachya 4 Zma_g10203, Zma_g10204, Zma_g14121, Zma_g16871
Portulacaceae Portulaca oleracea 8 evm.TU.LG03.578, evm.TU.LG10.1251, evm.TU.LG11.1581 ...
evm.TU.LG12.1152, evm.TU.LG19.1212, evm.TU.LG24.1214, evm.TU.LG25.760, evm.TU.LG26.856
Posidoniaceae Posidonia oceanica 1 gene.Posoc06g07270
Rhizophoraceae Bruguiera sexangula 5 evm.TU.Scaffold_11_RagTag.1326, evm.TU.Scaffold_4_RagTag.173 ...
evm.TU.Scaffold_14_RagTag.542, evm.TU.Scaffold_1_RagTag.1170, evm.TU.Scaffold_2_RagTag.1165
Rhizophoraceae Carallia pectinifolia 4 nbisL1-mrna-12632, nbisL1-mrna-17811, nbisL1-mrna-29176 ...
nbisL1-mrna-6450
Rhizophoraceae Ceriops tagal 4 nbisL1-mrna-12959, nbisL1-mrna-16215, nbisL1-mrna-1726 ...
nbisL1-mrna-6824
Rhizophoraceae Ceriops zippeliana 4 nbisL1-mrna-18829, nbisL1-mrna-2117, nbisL1-mrna-8204 ...
nbisL1-mrna-8206
Rhizophoraceae Kandelia candel 4 add.evm.TU.utg000007l.38, add.evm.TU.utg000010l.145 ...
evm.TU.utg000008l.104, evm.TU.utg000016l.804
Rhizophoraceae Kandelia obovata 3 Maker00000881, Maker00009084, Maker00017327
Rhizophoraceae Rhizophora apiculata 6 nbisL1-mrna-1044, nbisL1-mrna-10988, nbisL1-mrna-12431 ...
nbisL1-mrna-23325, nbisL1-mrna-23326, nbisL1-mrna-2383
Rhizophoraceae Rhizophora mangle 5 nbisL1-mrna-10569, nbisL1-mrna-13369, nbisL1-mrna-20635 ...
nbisL1-mrna-5561, nbisL1-mrna-6234
Salicaceae Populus euphratica 4 populus_peu27762, populus_peu29225, populus_peu30584 ...
populus_peu34079
Solanaceae Lycium barbarum 1 gene-LOC132631818
Solanaceae Solanum pennellii 1 gene-LOC107015414
Tamaricaceae Reaumuria soongarica 3 gene_15775, gene_15850, gene_5194
Tamaricaceae Tamarix chinensis 5 TC06G1729, TC09G2144, TC09G2145, TC09G2148, TC09G2149
Zosteraceae Zostera marina 1 Zosma03g26430.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.