Basic Information
Locus ID:
COCNU_07G006970
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
E3 ubiquitin-protein ligase XBOS33
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 19102467 | 19145045 | - | COCNU_07G006970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 55,367.64 Da | 51.39 | 84.02 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 185 | 215 | 3.6E-6 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 133 | 1.8E-16 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 223 | 280 | 2.2E-7 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 322 | 382 | 5.3E-8 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 280 | 1.31E-48 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 159 | 277 | 7.1E-24 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 4 | 150 | 4.3E-30 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 391 | 1.9E-7 | IPR013083 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 1.1E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 227 | 259 | 1.0E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.035 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 142 | 9.1 | IPR002110 |
| SMART | SM00248 | ANK_2a | 184 | 213 | 6.6E-6 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 326 | 376 | 9.671455 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 184 | 213 | 12.009989 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 227 | 253 | 10.68342 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 12.858994 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 13.971499 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 227 | 253 | 10.71288 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 8.97673 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.74663 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 184 | 216 | 12.68942 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 8.76305 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 341 | 350 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 112 | 127 | 2.5E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 200 | 214 | 2.5E-5 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 490 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_010919261.1 | probable E3 ubiquitin-protein ligase XBOS33 isoform X1 [Elaeis guineensis] | 0 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0IEW9 | E3 ubiquitin-protein ligase XBAT33 OS=Cocos nucifera OX=13894 GN=COCNU_07G006970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology