Basic Information
Locus ID:
COCNU_07G004500
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 11753622 | 11848545 | + | COCNU_07G004500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 485,915.72 Da | 42.92 | 91.37 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4210 | 4286 | 2.2E-7 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2219 | 2365 | 3.5E-10 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 380 | 5.1E-65 | IPR031646 |
| Pfam | PF06398 | Integral peroxisomal membrane peroxin | 2872 | 2982 | 1.4E-6 | IPR010482 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1975 | 2146 | 1.4E-8 | IPR009291 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 37 | 112 | 1.3E-17 | IPR026854 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2737 | 2757 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4312 | 4333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2862 | 2881 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_010919819.1 | uncharacterized protein LOC105043803 isoform X1 [Elaeis guineensis] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IEI0 | Pleckstrin (PH) domain-containing protein isoform 2 OS=Cocos nucifera OX=13894 GN=COCNU_07G004500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology