Basic Information
Locus ID:
COCNU_07G002550
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 6666142 | 6685909 | - | COCNU_07G002550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 204,908.55 Da | 49.79 | 85.06 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1474 | 1903 | 5.2893E-120 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1523 | 1908 | 9.2E-82 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1466 | 1901 | 1.01E-94 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 191 | 657 | 8.64E-43 | IPR016024 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1780 | 1906 | 4.3E-32 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 178 | 492 | 1.1E-52 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1413 | 1668 | 5.4E-43 | - |
| SMART | SM00185 | arm_5 | 222 | 263 | 120.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 305 | 345 | 61.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 348 | 386 | 8.2 | IPR000225 |
| SMART | SM00119 | hect_3 | 1487 | 1908 | 1.0E-84 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1571 | 1908 | 56.474857 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 972 | 1085 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 540 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1053 | 1081 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 540 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1139 | 1164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1102 | 1121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 973 | 1021 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1137 | 1176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 666 | 682 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 666 | 726 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_010920123.1 | E3 ubiquitin-protein ligase UPL3 [Elaeis guineensis] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IE47 | HECT-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_07G002550 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology