Basic Information
Locus ID:
COCNU_07G002440
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 6384157 | 6404316 | + | COCNU_07G002440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 95,519.55 Da | 36.10 | 79.94 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 36 | 284 | 6.92727E-157 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 767 | 825 | 9.4E-6 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 66 | 320 | 1.0E-70 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 325 | 414 | 2.3E-19 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 592 | 690 | 1.2E-13 | IPR011682 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 425 | 836 | 9.57E-90 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 25 | 322 | 1.96E-98 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 324 | 419 | 3.92E-27 | IPR028995 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 289 | 366 | 1.9E-30 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 367 | 423 | 7.5E-20 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 431 | 542 | 7.8E-27 | IPR013780 |
| Gene3D | G3DSA:2.60.40.1360 | - | 754 | 849 | 8.1E-26 | - |
| Gene3D | G3DSA:2.70.98.30 | - | 574 | 733 | 1.5E-38 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 36 | 288 | 2.7E-99 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 325 | 399 | 3.0E-21 | IPR015341 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 18 | 5.0 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 821 | 840 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 821 | 849 | - | - |
| Coils | Coil | Coil | 800 | 834 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_010920133.1 | alpha-mannosidase isoform X2 [Elaeis guineensis] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IEA5 | Alpha-mannosidase OS=Cocos nucifera OX=13894 GN=COCNU_07G002440 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology