Basic Information
Locus ID:
COCNU_07G002430
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 6325436 | 6346606 | + | COCNU_07G002430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 95,108.14 Da | 35.27 | 78.61 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 36 | 312 | 9.16353E-179 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 759 | 815 | 9.3E-6 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 618 | 709 | 8.1E-16 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 353 | 442 | 2.7E-19 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 37 | 348 | 1.4E-90 | IPR000602 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 25 | 350 | 3.38E-111 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 352 | 447 | 4.25E-27 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 453 | 828 | 4.87E-74 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1360 | - | 745 | 841 | 4.6E-25 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 395 | 450 | 8.5E-20 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 459 | 569 | 3.1E-26 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 317 | 394 | 1.2E-29 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 570 | 724 | 1.4E-33 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 36 | 316 | 5.4E-120 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 353 | 427 | 2.8E-21 | IPR015341 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 18 | 5.0 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 816 | 841 | - | - |
| Coils | Coil | Coil | 806 | 826 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_010920132.2 | alpha-mannosidase isoform X1 [Elaeis guineensis] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IE11 | Alpha-mannosidase OS=Cocos nucifera OX=13894 GN=COCNU_07G002430 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology