Basic Information
Locus ID:
COCNU_07G002360
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 6215191 | 6215934 | - | COCNU_07G002360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 27,891.60 Da | 53.01 | 80.57 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 199 | 243 | 9.1E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 199 | 246 | 2.07E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 163 | 246 | 1.8E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 200 | 242 | 4.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 200 | 243 | 12.666314 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_038971270.1 | uncharacterized protein LOC120104385 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8K0N4X2 | RING-type domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_07G002360 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_07G002360 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC120104385, gene-LOC120104552 |