Basic Information
Locus ID:
COCNU_07G000990
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 3049578 | 3060190 | - | COCNU_07G000990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 43,758.15 Da | 50.84 | 62.23 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 286 | 319 | 2.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 371 | 403 | 0.16 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 175 | 403 | 6.66E-24 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 215 | 403 | 2.9E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 281 | 319 | 7.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 364 | 403 | 0.0095 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 371 | 403 | 11.602863 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 371 | 403 | 12.346452 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 135 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.1 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_008802406.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Phoenix dactylifera] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IEG4 | Putative Transcriptional corepressor LEUNIG-like protein OS=Cocos nucifera OX=13894 GN=COCNU_07G000990 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology