Basic Information
Locus ID:
COCNU_07G000250
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 753165 | 757063 | - | COCNU_07G000250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.82 | 16,735.03 Da | 36.42 | 103.25 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02801 | DUS_like_FMN | 1 | 144 | 1.61552E-57 | IPR035587 |
| Pfam | PF01207 | Dihydrouridine synthase (Dus) | 3 | 147 | 2.6E-40 | IPR035587 |
| SUPERFAMILY | SSF51395 | FMN-linked oxidoreductases | 3 | 144 | 5.31E-38 | - |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 1 | 148 | 2.0E-46 | IPR013785 |
| ProSitePatterns | PS01136 | Uncharacterized protein family UPF0034 signature. | 23 | 41 | - | IPR018517 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49640.3 | - | 0 |
| RefSeq | XP_029117501.1 | tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X2 [Elaeis guineensis] | 0 |
| Q9NX74 | tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens OX=9606 GN=DUS2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N426 | Putative tRNA-dihydrouridine(20) synthase [NAD(P) ]-like OS=Cocos nucifera OX=13894 GN=COCNU_07G000250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19605 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16443 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012991 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g152950 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg43019, Sbi_jg45622 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11467 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002062 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35765, Sgl41033 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003029, gene:ENSEOMG00000012491 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0000260, CQ.Regalona.r1.6BG0000160 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30204270 |
| Apiaceae | Apium graveolens | 1 | Ag5G00387 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G000250 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708392, gene-LOC120106513 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1030.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G12878 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G49640.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010537m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g12460.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g063300.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0408 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0424 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno07g08020, gene.Cymno13g01320 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g22270 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10097, nbisL1-mrna-10594 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2642 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36347 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1685, BH09.1869, CH09.2011 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0309500, gene-QOZ80_4BG0340560 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0183920.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_045230 |
| Poaceae | Oryza coarctata | 2 | Oco07G011380, Oco08G011140 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g44890.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G169100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0301929 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr25G006610, Chr26G011690, Chr30G006510 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G641900 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2AG053780 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G371800.1, TraesCS2B02G388900.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb427250_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37168 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20113 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1000, evm.TU.LG25.340 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc10g03130, gene.Posoc10g03150 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1737 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17422 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1312 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12030 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1057 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008097 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15413 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3348 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603147 |
| Solanaceae | Solanum chilense | 1 | SOLCI000119000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020981 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.8862_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0616 |
| Zosteraceae | Zostera marina | 1 | Zosma03g22890.v3.1 |