Basic Information
Locus ID:
COCNU_06G020720
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
GDH1
Description:
Glutamate dehydrogenase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 80619230 | 80656752 | - | COCNU_06G020720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 72,628.74 Da | 21.09 | 98.14 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01076 | NAD_bind_1_Glu_DH | 486 | 660 | 1.89156E-90 | IPR033922 |
| CDD | cd01561 | CBS_like | 4 | 252 | 4.63045E-115 | - |
| Pfam | PF00208 | Glutamate/Leucine/Phenylalanine/Valine dehydrogenase | 486 | 664 | 1.1E-55 | IPR006096 |
| Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | 7 | 250 | 4.1E-54 | IPR001926 |
| Pfam | PF00416 | Ribosomal protein S13/S18 | 261 | 366 | 6.7E-37 | IPR001892 |
| Pfam | PF02812 | Glu/Leu/Phe/Val dehydrogenase, dimerisation domain | 350 | 469 | 1.6E-44 | IPR006097 |
| SUPERFAMILY | SSF46946 | S13-like H2TH domain | 260 | 366 | 2.71E-18 | IPR010979 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 486 | 667 | 1.34E-60 | IPR036291 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 4 | 255 | 6.94E-83 | IPR036052 |
| SUPERFAMILY | SSF53223 | Aminoacid dehydrogenase-like, N-terminal domain | 354 | 488 | 5.44E-51 | - |
| Gene3D | G3DSA:1.10.8.50 | - | 253 | 327 | 7.0E-34 | - |
| Gene3D | G3DSA:3.40.50.1100 | - | 106 | 252 | 2.7E-110 | IPR036052 |
| Gene3D | G3DSA:3.40.50.720 | - | 486 | 672 | 1.6E-70 | - |
| Gene3D | G3DSA:3.40.50.10860 | Leucine Dehydrogenase, chain A, domain 1 | 349 | 485 | 1.1E-51 | - |
| Gene3D | G3DSA:3.40.50.1100 | - | 4 | 105 | 2.7E-110 | IPR036052 |
| SMART | SM00839 | ELFV_dehydrog_3 | 488 | 674 | 2.1E-60 | IPR006096 |
| TIGRFAM | TIGR01139 | cysK: cysteine synthase A | 4 | 253 | 3.5E-115 | IPR005859 |
| TIGRFAM | TIGR01136 | cysKM: cysteine synthase | 4 | 254 | 6.0E-110 | IPR005856 |
| ProSiteProfiles | PS50159 | Ribosomal protein S13 family profile. | 262 | 365 | 20.800657 | IPR001892 |
| ProSitePatterns | PS00074 | Glu / Leu / Phe / Val dehydrogenases active site. | 406 | 419 | - | IPR033524 |
| PRINTS | PR00082 | Glutamate/leucine/phenylalanine/valine dehydrogenase signature | 646 | 657 | 8.3E-35 | IPR006095 |
| PRINTS | PR00082 | Glutamate/leucine/phenylalanine/valine dehydrogenase signature | 477 | 499 | 8.3E-35 | IPR006095 |
| PRINTS | PR00082 | Glutamate/leucine/phenylalanine/valine dehydrogenase signature | 519 | 539 | 8.3E-35 | IPR006095 |
| PRINTS | PR00082 | Glutamate/leucine/phenylalanine/valine dehydrogenase signature | 398 | 412 | 8.3E-35 | IPR006095 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko00220 (Arginine biosynthesis)
map00220 (Arginine biosynthesis)
ko00250 (Alanine, aspartate and glutamate metabolism)
map00250 (Alanine, aspartate and glutamate metabolism)
ko00910 (Nitrogen metabolism)
map00910 (Nitrogen metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
map04217 (Necroptosis)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18170.1 | glutamate dehydrogenase 1. Encodes the 43 kDa alpha-subunit of the glutamate dehydrogenase with a putative mitochondrial transit polypeptide and NAD(H)- and alpha-ketoglutarate-binding domains. Mitochondrial localization confirmed by subcellular fractionation. Combines in several ratios with GDH2 protein (GDH-beta) to form seven isoenzymes. Catalyzes the cleavage of glycine residues. May be involved in ammonia assimilation under conditions of inorganic nitrogen excess. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells. | 0 |
| RefSeq | XP_026655758.1 | glutamate dehydrogenase 1, mitochondrial isoform X2 [Phoenix dactylifera] | 0 |
| A2XMV1 | Glutamate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=GDH1 PE=3 SV=2 | 0 | |
| TrEMBL | A0A8K0IDE7 | ELFV_dehydrog domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_06G020720 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology