halophFGD

Basic Information

Locus ID: COCNU_06G019260

Species & Taxonomic ID: Cocos nucifera & 13894

Genome Assembly: GCA_008124465.1

Description: WD domain, G-beta repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	72318319	72332687	-	COCNU_06G019260

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.70	35,945.29 Da	34.69	83.31	-0.07

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	29	325	7.54838E-99	-
Pfam	PF00400	WD domain, G-beta repeat	241	281	0.035	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	116	152	3.8E-9	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	287	325	0.0034	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	198	237	9.1E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	74	107	5.0E-9	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	32	65	2.4E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	157	194	1.6E-9	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	25	325	2.44E-94	IPR036322
Gene3D	G3DSA:2.130.10.10	-	15	328	8.6E-132	IPR015943
SMART	SM00320	WD40_4	113	152	1.1E-10	IPR001680
SMART	SM00320	WD40_4	68	107	9.3E-10	IPR001680
SMART	SM00320	WD40_4	26	65	3.2E-10	IPR001680
SMART	SM00320	WD40_4	197	237	1.7E-5	IPR001680
SMART	SM00320	WD40_4	240	282	0.5	IPR001680
SMART	SM00320	WD40_4	285	326	9.1E-4	IPR001680
SMART	SM00320	WD40_4	155	194	2.1E-12	IPR001680
PIRSF	PIRSF002394	GNBP_B	9	328	7.4E-81	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	75	110	16.089291	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	120	161	17.459436	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	162	199	12.420132	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	33	65	15.922199	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	205	242	10.258324	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	120	157	13.369217	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	162	203	16.490309	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	205	246	13.616343	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	265	291	9.305395	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	75	110	13.2374	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	33	65	13.105581	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	139	153	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	224	238	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	269	283	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	181	195	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	94	108	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	52	66	1.4E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	94	108	1.4E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	139	153	1.4E-8	IPR020472

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14963 (COMPASS component SWD3)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_010943189.1	COMPASS-like H3K4 histone methylase component WDR5A [Elaeis guineensis]
Swiss-Prot	Q4V8C4	WD repeat-containing protein 5B OS=Rattus norvegicus OX=10116 GN=Wdr5b PE=2 SV=1
TrEMBL	A0A8K0N4H8	COMPASS-like H3K4 histone methylase component WDR5A OS=Cocos nucifera OX=13894 GN=COCNU_06G019260 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg35306, jg39882
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10152, gene_13572
Amaranthaceae	Atriplex hortensis	1	Ah037249
Amaranthaceae	Beta vulgaris	2	BVRB_4g074580, BVRB_5g119310
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17396, Sbi_jg30720, Sbi_jg58546, Sbi_jg62046
Amaranthaceae	Salicornia europaea	2	Seu_jg28415, Seu_jg660
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00004978
Amaranthaceae	Suaeda glauca	4	Sgl24276, Sgl29451, Sgl55025, Sgl80526
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000009682, gene:ENSEOMG00000029317 ... gene:ENSEOMG00000040311
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.4AG0002860, CQ.Regalona.r1.4BG0003010
Anacardiaceae	Pistacia vera	2	pistato.v30056180, pistato.v30204350
Apiaceae	Apium graveolens	2	Ag10G00729, Ag4G01185
Arecaceae	Cocos nucifera	6	COCNU_05G000970, COCNU_06G014350, COCNU_06G019260 ... COCNU_08G011030, COCNU_14G012340, contig68953594G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103704252, gene-LOC103705709, gene-LOC103707622 ... gene-LOC120106995, gene-LOC120111129
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.719.V1.1
Asteraceae	Flaveria trinervia	2	Ftri10G26086, Ftri17G18327
Brassicaceae	Arabidopsis thaliana	2	AT3G49660.1, AT4G02730.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10010551m.g.v1.0, Thhalv10022457m.g.v1.0 ... Thhalv10023908m.g.v1.0, Thhalv10028762m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g12420.v2.2, Sp6g02690.v2.2
Brassicaceae	Brassica nigra	3	BniB05g055250.2N, BniB08g045430.2N, BniB08g063320.2N
Casuarinaceae	Casuarina glauca	1	Cgl06G0430
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno06g01100, gene.Cymno06g11640
Dunaliellaceae	Dunaliella salina	2	Dusal.0127s00025.v1.0, Dusal.2856s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g09460, gene.Thate09g06630
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.1454, evm.TU.LG04.1083, evm.TU.LG10.567
Plantaginaceae	Plantago ovata	3	Pov_00008045, Pov_00024139, Pov_00033976
Plumbaginaceae	Limonium bicolor	3	Lb3G15846, Lb4G23840, Lb4G23844
Poaceae	Echinochloa crus-galli	7	AH01.761, AH02.2714, AH03.3413, BH01.903, BH03.3631 ... CH01.921, CH03.3832
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_3BG0263400, gene-QOZ80_7AG0573580 ... gene-QOZ80_7BG0604880
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0135250.1, HORVU.MOREX.r3.4HG0338790.1
Poaceae	Lolium multiflorum	2	gene-QYE76_040191, gene-QYE76_040541
Poaceae	Oryza coarctata	3	Oco05G022250, Oco06G023140, Oco14G011270
Poaceae	Oryza sativa	2	LOC_Os03g51550.2, LOC_Os07g38430.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G097800, gene-BS78_02G322200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0304498, Pt_Chr0304575
Poaceae	Sporobolus alterniflorus	7	Chr01G006520, Chr04G027630, Chr07G026550, Chr12G030960 ... Chr19G003920, Chr24G010700, Chr27G013340
Poaceae	Thinopyrum elongatum	2	Tel2E01G377000, Tel4E01G096100
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG025340, gene_TRIDC2BG029800 ... gene_TRIDC4AG040350, gene_TRIDC4BG008810
Poaceae	Triticum aestivum	6	TraesCS2A02G196900.1, TraesCS2B02G224500.1 ... TraesCS2D02G204900.1, TraesCS4A02G258000.1, TraesCS4B02G056500.1, TraesCS4D02G056800.1
Poaceae	Zea mays	5	Zm00001eb055840_P001, Zm00001eb270960_P001 ... Zm00001eb276600_P001, Zm00001eb325000_P001, Zm00001eb325010_P001
Poaceae	Zoysia japonica	4	nbis-gene-14920, nbis-gene-15990, nbis-gene-29410 ... nbis-gene-633
Poaceae	Zoysia macrostachya	3	Zma_g2906, Zma_g585, Zma_g6694
Portulacaceae	Portulaca oleracea	1	evm.TU.LG14.1612
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g21290, gene.Posoc03g05020, gene.Posoc03g26900
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_2_RagTag.305, evm.TU.Scaffold_6_RagTag.1740
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-17420, nbisL1-mrna-4886
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-11893, nbisL1-mrna-19088
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-12028, nbisL1-mrna-9833
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.771, evm.TU.utg000011l.1059
Rhizophoraceae	Kandelia obovata	2	Maker00005699, Maker00008120
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-15415, nbisL1-mrna-2488
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-3346, nbisL1-mrna-6081
Salicaceae	Populus euphratica	5	populus_peu05212, populus_peu09234, populus_peu16798 ... populus_peu23727, populus_peu32714
Solanaceae	Lycium barbarum	2	gene-LOC132610932, gene-LOC132622208
Solanaceae	Solanum chilense	1	SOLCI004978600
Solanaceae	Solanum pennellii	2	gene-LOC107011469, gene-LOC107031421
Tamaricaceae	Reaumuria soongarica	3	STRG.10373_chr07_-, STRG.17356_chr09_-, gene_4734
Tamaricaceae	Tamarix chinensis	3	TC02G1598, TC02G2983, TC07G2682
Zosteraceae	Zostera marina	2	Zosma05g23000.v3.1, Zosma06g02780.v3.1