Basic Information
Locus ID:
COCNU_06G018550
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
DNA binding domain with preference for A/T rich regions
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 67431008 | 67462110 | + | COCNU_06G018550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 143,338.81 Da | 44.02 | 75.09 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 895 | 1303 | 1.45E-22 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 832 | 1164 | 3.2E-21 | IPR015943 |
| SMART | SM00384 | AT_hook_2 | 323 | 335 | 2.9 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 554 | 566 | 3.3 | IPR017956 |
| SMART | SM00320 | WD40_4 | 863 | 912 | 340.0 | IPR001680 |
| SMART | SM00384 | AT_hook_2 | 390 | 402 | 19.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 246 | 258 | 2.9 | IPR017956 |
| SMART | SM00320 | WD40_4 | 1040 | 1079 | 33.0 | IPR001680 |
| SMART | SM00384 | AT_hook_2 | 472 | 484 | 3.7 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 300 | 312 | 4.4 | IPR017956 |
| SMART | SM00320 | WD40_4 | 992 | 1036 | 0.03 | IPR001680 |
| SMART | SM00320 | WD40_4 | 943 | 983 | 6.0 | IPR001680 |
| SMART | SM00384 | AT_hook_2 | 721 | 733 | 43.0 | IPR017956 |
| SMART | SM00320 | WD40_4 | 1098 | 1137 | 71.0 | IPR001680 |
| PRINTS | PR00930 | High mobility group protein (HMGY) signature | 276 | 287 | 1.1E-5 | IPR000116 |
| PRINTS | PR00930 | High mobility group protein (HMGY) signature | 289 | 308 | 1.1E-5 | IPR000116 |
| PRINTS | PR00930 | High mobility group protein (HMGY) signature | 244 | 256 | 1.1E-5 | IPR000116 |
| PRINTS | PR00929 | AT-hook-like domain signature | 246 | 256 | 8.2E-9 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 321 | 331 | 8.2E-9 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 298 | 309 | 8.2E-9 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1212 | 1244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 233 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19485.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_029117085.1 | uncharacterized protein LOC105033760 isoform X3 [Elaeis guineensis] | 0 |
| TrEMBL | A0A8K0ID18 | General transcription factor 3C polypeptide 2 OS=Cocos nucifera OX=13894 GN=COCNU_06G018550 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15066 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14440 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031016 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g159850 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27523, Sbi_jg33061 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7828 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012238 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl71463, Sgl71464, Sgl75049, Sgl75050 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005281, gene:ENSEOMG00000037969 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30085670 |
| Apiaceae | Apium graveolens | 1 | Ag3G00606 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G018550 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.632.V1.1, AsparagusV1_Unassigned.695.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G00772, Ftri12G13180, Ftri12G33984 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G19485.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006802m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g17360.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g008220.2N, BniB04g034220.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1471 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1521, Cgl02G1530 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g15840, gene.Cymno10g06170 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0230s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g20360 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6389, nbisL1-mrna-6391 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.435 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002039, Pov_00023493, Pov_00032255 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G09176, Lb7G33630, Lb7G33631 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3943, BH02.3963, BH07.4273 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0040550, gene-QOZ80_1BG0090600 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0088990.1, HORVU.MOREX.r3.3HG0300870.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056501 |
| Poaceae | Oryza coarctata | 2 | Oco01G025400, Oco02G026310 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g63910.1, LOC_Os07g27140.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G343100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0105919, Pt_Chr0105956, Pt_Chr0601406, Pt_Chr0601465 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G004080, Chr02G004090, Chr05G029200, Chr16G015830 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G665400, Tel3E01G590900, Tel5E01G564200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG059300, gene_TRIDC1BG068040 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G402200.1, TraesCS1B02G431300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb147330_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11324 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9045 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2977, evm.TU.LG16.630 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19140 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1433 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6160 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4512 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4019 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.462 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016780 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7637 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13609, nbisL1-mrna-13610 |
| Salicaceae | Populus euphratica | 4 | populus_peu07853, populus_peu10811, populus_peu10812 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132629841 |
| Solanaceae | Solanum chilense | 1 | SOLCI000909700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029362 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.1846_chr01_+, gene_5677, gene_6689 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2494, TC07G0798 |
| Zosteraceae | Zostera marina | 1 | Zosma06g19610.v3.1 |