Basic Information
Locus ID:
COCNU_06G018260
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 63876567 | 63930066 | - | COCNU_06G018260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 131,674.39 Da | 45.39 | 76.99 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 194 | 522 | 2.00224E-165 | - |
| CDD | cd00121 | MATH | 53 | 176 | 7.70714E-40 | IPR002083 |
| Pfam | PF00917 | MATH domain | 58 | 178 | 4.6E-19 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 884 | 1095 | 6.3E-58 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 196 | 517 | 1.8E-45 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 621 | 873 | 7.4E-77 | IPR024729 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 50 | 185 | 3.43E-41 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 191 | 549 | 3.34E-96 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 799 | 897 | 2.8E-29 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 51 | 192 | 4.2E-54 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 193 | 521 | 3.7E-88 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 681 | 798 | 1.1E-43 | - |
| SMART | SM00061 | math_3 | 53 | 157 | 1.1E-20 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 51 | 176 | 38.136177 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 196 | 520 | 39.659801 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 436 | 453 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 197 | 212 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 44 | - | - |
| Coils | Coil | Coil | 533 | 563 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_008808604.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X5 [Phoenix dactylifera] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0IDP6 | ubiquitinyl hydrolase 1 OS=Cocos nucifera OX=13894 GN=COCNU_06G018260 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology