Basic Information
Locus ID:
COCNU_06G017420
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 54652816 | 54659569 | - | COCNU_06G017420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 48,924.13 Da | 44.37 | 102.64 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 21 | 124 | 1.0209E-47 | - |
| Pfam | PF03000 | NPH3 family | 211 | 439 | 3.1E-78 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 28 | 117 | 1.3E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 115 | 6.04E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 16 | 121 | 6.2E-13 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 9.909723 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 440 | 65.86219 | IPR027356 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_010907392.1 | BTB/POZ domain-containing protein NPY4 isoform X1 [Elaeis guineensis] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0ICP2 | BTB/POZ domain-containing protein NPY4 OS=Cocos nucifera OX=13894 GN=COCNU_06G017420 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology