Basic Information
Locus ID:
COCNU_06G016750
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 51230262 | 51233088 | + | COCNU_06G016750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 30,523.14 Da | 46.49 | 107.95 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 46 | 79 | 3.2E-8 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 104 | 7.77E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 35 | 138 | 1.5E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 46 | 101 | 10.173057 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 65 | 74 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010939031.1 | uncharacterized protein LOC105057975 [Elaeis guineensis] | 0 |
| TrEMBL | A0A8K0ICQ6 | RING finger protein OS=Cocos nucifera OX=13894 GN=COCNU_06G016750 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology