Basic Information
Locus ID:
COCNU_06G013340
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
OMR1
Description:
Threonine dehydratase biosynthetic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 38808576 | 38822775 | + | COCNU_06G013340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.99 | 67,644.97 Da | 43.24 | 87.52 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04907 | ACT_ThrD-I_2 | 278 | 348 | 2.66651E-35 | - |
| CDD | cd01837 | SGNH_plant_lipase_like | 352 | 612 | 2.40261E-107 | IPR035669 |
| Pfam | PF00585 | C-terminal regulatory domain of Threonine dehydratase | 213 | 267 | 3.1E-10 | IPR001721 |
| Pfam | PF00585 | C-terminal regulatory domain of Threonine dehydratase | 270 | 346 | 5.2E-23 | IPR001721 |
| Pfam | PF00657 | GDSL-like Lipase/Acylhydrolase | 354 | 604 | 6.9E-29 | IPR001087 |
| SUPERFAMILY | SSF55021 | ACT-like | 220 | 264 | 2.29E-8 | - |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 161 | 249 | 5.08E-8 | IPR036052 |
| SUPERFAMILY | SSF55021 | ACT-like | 276 | 347 | 3.2E-21 | - |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 122 | 159 | 1.43E-7 | IPR036052 |
| Gene3D | G3DSA:3.40.1020.10 | Biosynthetic Threonine Deaminase; Domain 3 | 266 | 349 | 4.2E-30 | IPR038110 |
| Gene3D | G3DSA:3.40.1020.10 | Biosynthetic Threonine Deaminase; Domain 3 | 222 | 265 | 2.1E-10 | IPR038110 |
| Gene3D | G3DSA:3.40.50.1100 | - | 108 | 160 | 1.1E-10 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 161 | 221 | 3.2E-7 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1110 | SGNH hydrolase | 350 | 617 | 8.9E-52 | IPR036514 |
| ProSiteProfiles | PS51672 | ACT-like domain profile. | 279 | 350 | 16.295868 | IPR001721 |
| ProSitePatterns | PS01098 | "Lipolytic enzymes ""G-D-S-L"" family, serine active site." | 354 | 365 | - | IPR008265 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00260 (Glycine, serine and threonine metabolism)
map00260 (Glycine, serine and threonine metabolism)
ko00290 (Valine, leucine and isoleucine biosynthesis)
map00290 (Valine, leucine and isoleucine biosynthesis)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03810.1 | GDSL-like Lipase/Acylhydrolase family protein. | 0 |
| RefSeq | XP_010933399.1 | GDSL esterase/lipase At5g03810 [Elaeis guineensis] | 0 |
| Q9FFN0 | GDSL esterase/lipase At5g03810 OS=Arabidopsis thaliana OX=3702 GN=At5g03810 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8K0ICK4 | ACT-like domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_06G013340 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology