Basic Information
Locus ID:
COCNU_06G013280
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 38705102 | 38719067 | + | COCNU_06G013280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 28,985.10 Da | 43.00 | 94.23 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 122 | 143 | 0.0053 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 154 | 187 | 0.14 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 9 | 258 | 2.75E-22 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 10 | 262 | 1.9E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 149 | 187 | 0.67 | IPR001680 |
| SMART | SM00320 | WD40_4 | 110 | 145 | 0.35 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52190.1 | phosphate transporter traffic facilitator1. Encodes a plant specific protein structurally related to the SEC12 proteins of the early secretory pathway. Mutation of PHF1 impairs Pi transport. Expression was detected in all tissues, and was induced by Pi starvation. Localized in endoplasmic reticulum (ER), and mutation of PHF1 resulted in ER retention and reduced accumulation of the plasma membrane PHT1;1 transporter. | 0 |
| RefSeq | XP_029123358.1 | SEC12-like protein 1 isoform X2 [Elaeis guineensis] | 0 |
| Q8GYE0 | SEC12-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=PHF1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0N3I2 | SEC12-like protein 1 OS=Cocos nucifera OX=13894 GN=COCNU_06G013280 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology