Basic Information
Locus ID:
COCNU_06G013120
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 38166955 | 38170803 | - | COCNU_06G013120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 26,905.28 Da | 30.33 | 80.00 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 118 | 242 | 1.06891E-40 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 124 | 243 | 2.4E-24 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 49 | 100 | 5.5E-6 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 37 | 99 | 1.31E-14 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 102 | 243 | 1.23E-37 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 29 | 100 | 2.3E-18 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 101 | 245 | 3.1E-46 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 115 | 243 | 5.0E-25 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 38 | 243 | 41.688484 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_029123973.1 | LOW QUALITY PROTEIN: horcolin-like [Elaeis guineensis] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0N301 | Putative Horcolin OS=Cocos nucifera OX=13894 GN=COCNU_06G013120 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology