Basic Information
Locus ID:
COCNU_06G010780
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 30938085 | 30947700 | + | COCNU_06G010780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 35,466.07 Da | 34.65 | 93.53 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11883 | Domain of unknown function (DUF3403) | 279 | 323 | 1.1E-11 | IPR021820 |
| Pfam | PF01453 | D-mannose binding lectin | 84 | 144 | 7.0E-9 | IPR001480 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 71 | 158 | 1.31E-15 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 155 | 226 | 5.05E-14 | IPR011009 |
| Gene3D | G3DSA:2.90.10.10 | - | 32 | 149 | 1.1E-13 | IPR036426 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 150 | 229 | 2.8E-20 | - |
| SMART | SM00108 | blect_4 | 41 | 156 | 4.8E-8 | IPR001480 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 36 | 154 | 12.517398 | IPR001480 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21380.1 | receptor kinase 3. encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. | 0 |
| RefSeq | XP_029122472.1 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 isoform X1 [Elaeis guineensis] | 0 |
| A0A075F7E9 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 OS=Oryza sativa subsp. indica OX=39946 GN=LECRK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0IBM2 | Bulb-type lectin domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_06G010780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000000422 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G010780, scaffold045056G000070 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G01662 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G61475.1 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr26G016310 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5941 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23653 |