Basic Information
Locus ID:
COCNU_06G009670
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 27981220 | 27998691 | - | COCNU_06G009670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 151,485.59 Da | 49.92 | 78.26 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1214 | 1321 | 4.18633E-52 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 609 | 940 | 1.14574E-84 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 1056 | 1092 | 2.0E-6 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1211 | 1311 | 9.8E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 627 | 1017 | 4.8E-67 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 949 | 1368 | 5.32E-52 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 585 | 940 | 2.3E-44 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1055 | 1104 | 3.98E-10 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 807 | 951 | 1.3E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 707 | 797 | 8.2E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 582 | 668 | 9.5E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 955 | 1369 | 1.9E-59 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1053 | 1109 | 5.4E-9 | IPR013083 |
| SMART | SM00490 | helicmild6 | 1228 | 1311 | 1.0E-14 | IPR001650 |
| SMART | SM00487 | ultradead3 | 605 | 919 | 3.1E-27 | IPR014001 |
| SMART | SM00184 | ring_2 | 1056 | 1094 | 0.0034 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1056 | 1092 | 10.453364 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1205 | 1359 | 13.855086 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 624 | 902 | 12.477039 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1071 | 1080 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 788 | 820 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_029116867.1 | helicase-like transcription factor CHR28 isoform X2 [Elaeis guineensis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N2P7 | Helicase-like transcription factor CHR28 OS=Cocos nucifera OX=13894 GN=COCNU_06G009670 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology