Basic Information
Locus ID:
COCNU_06G009100
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 26162221 | 26175952 | - | COCNU_06G009100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 93,958.29 Da | 45.40 | 68.95 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 243 | 400 | 2.98726E-30 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 711 | 754 | 7.3956E-17 | - |
| Pfam | PF13639 | Ring finger domain | 711 | 753 | 1.8E-6 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 759 | 816 | 4.3E-23 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 239 | 401 | 2.3E-8 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 583 | 658 | 1.3E-18 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 710 | 757 | 8.03E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 649 | 704 | 2.35E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 577 | 639 | 2.62E-16 | IPR037274 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 234 | 473 | 2.3E-27 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 784 | 824 | 1.6E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 707 | 756 | 2.7E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 712 | 753 | 1.3E-4 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 576 | 645 | 24.580553 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 712 | 754 | 11.028731 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 648 | 711 | 29.577091 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_010922003.1 | zinc finger protein BRUTUS [Elaeis guineensis] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IB94 | Putative Zinc finger protein BRUTUS OS=Cocos nucifera OX=13894 GN=COCNU_06G009100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology