Basic Information
Locus ID:
COCNU_06G008480
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
ATP-dependent RNA
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 24642614 | 24657396 | + | COCNU_06G008480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 91,909.44 Da | 55.38 | 65.94 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 402 | 531 | 4.41728E-63 | - |
| CDD | cd00201 | WW | 22 | 52 | 0.00111236 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 199 | 377 | 1.8E-44 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 413 | 522 | 2.1E-33 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 52 | 3.59E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 247 | 537 | 1.14E-69 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 393 | 564 | 5.3E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 151 | 392 | 4.2E-80 | IPR027417 |
| SMART | SM00487 | ultradead3 | 194 | 405 | 1.4E-55 | IPR014001 |
| SMART | SM00490 | helicmild6 | 442 | 522 | 5.1E-35 | IPR001650 |
| SMART | SM00456 | ww_5 | 20 | 53 | 1.9E-5 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 417 | 561 | 24.969109 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 175 | 203 | 11.640392 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 206 | 388 | 28.987751 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 19 | 53 | 10.876201 | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 334 | 342 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 25 | 51 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 731 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 703 | 769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 610 | 644 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 664 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 707 | 721 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 788 | 837 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 127 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_010923235.1 | ATP-dependent RNA helicase-like protein DB10 isoform X1 [Elaeis guineensis] | 0 |
| Q5VQL1 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0N329 | ATP-dependent RNA helicase-like protein DB10 OS=Cocos nucifera OX=13894 GN=COCNU_06G008480 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology