Basic Information
Locus ID:
COCNU_06G007260
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
JAB/MPN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 19112728 | 19122772 | + | COCNU_06G007260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 40,523.13 Da | 56.46 | 78.76 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 187 | 360 | 5.35834E-99 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 184 | 289 | 1.0E-13 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 185 | 316 | 1.26E-18 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 170 | 361 | 4.0E-67 | - |
| SMART | SM00232 | pad1_6 | 189 | 313 | 5.0E-13 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 186 | 314 | 26.395254 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_010925586.1 | AMSH-like ubiquitin thioesterase 2 isoform X2 [Elaeis guineensis] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0N3A3 | AMSH-like ubiquitin thioesterase 2 OS=Cocos nucifera OX=13894 GN=COCNU_06G007260 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology