Basic Information
Locus ID:
COCNU_06G005980
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 15932337 | 15933056 | - | COCNU_06G005980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 26,453.90 Da | 72.36 | 78.66 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 115 | 158 | 2.49354E-19 | - |
| Pfam | PF13639 | Ring finger domain | 114 | 158 | 2.7E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 104 | 164 | 2.27E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 75 | 164 | 2.1E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 116 | 157 | 7.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 116 | 158 | 13.005633 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 205 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010919719.1 | RING-H2 finger protein ATL40 [Elaeis guineensis] | 0 |
| Q9SLC3 | E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IAR3 | RING-H2 finger protein ATL40 OS=Cocos nucifera OX=13894 GN=COCNU_06G005980 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | COCNU_06G005980, COCNU_14G003980 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709527 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3292, BH02.3671, CH02.3207 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0083760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0289690.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055187 |
| Poaceae | Oryza coarctata | 2 | Oco01G020540, Oco02G021080 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g55110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G280000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602638 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G009350, Chr05G024150, Chr08G016490 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G479400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG043390, gene_TRIDC3AG043400 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G293400.1.cds1, TraesCS3A02G293500.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb152830_P001, Zm00001eb370730_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11902, nbis-gene-31084 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11169, Zma_g8680 |