Basic Information
Locus ID:
COCNU_06G005250
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 14120703 | 14129230 | + | COCNU_06G005250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 105,466.06 Da | 37.07 | 89.10 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 679 | 829 | 3.49963E-31 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 681 | 826 | 1.8E-26 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 671 | 845 | 1.7E-42 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 640 | 917 | 2.0E-86 | IPR016135 |
| SMART | SM00212 | ubc_7 | 679 | 836 | 3.0E-34 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 676 | 836 | 36.047092 | IPR000608 |
| Coils | Coil | Coil | 528 | 548 | - | - |
| Coils | Coil | Coil | 604 | 631 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33770.1 | phosphate 2. Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. | 0 |
| RefSeq | XP_010917873.2 | probable ubiquitin-conjugating enzyme E2 24 [Elaeis guineensis] | 0 |
| Q8VY10 | Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana OX=3702 GN=UBC24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IBT0 | Putative ubiquitin-conjugating enzyme E2 24 OS=Cocos nucifera OX=13894 GN=COCNU_06G005250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22240 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018034 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g183150 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26087, Sbi_jg9934 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18795 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017042 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45930, Sgl50629 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009087, gene:ENSEOMG00000034713 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0005310, CQ.Regalona.r1.8BG0005430 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30072770 |
| Apiaceae | Apium graveolens | 1 | Ag6G01008 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G005250, COCNU_14G003510 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709500, gene-LOC103715581 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1961.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G12476 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G33770.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016214m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g16120.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g010360.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2283 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2586 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g16690, gene.Cymno07g05990 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g07660 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7625 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.953 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005627 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00146 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1438, BH05.1608, CH05.1811 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0363670, gene-QOZ80_5BG0411790 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0086090.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_015542, gene-QYE76_015751 |
| Poaceae | Oryza coarctata | 2 | Oco09G016470, Oco10G016300 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g48390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G231400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0505746 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr12G021380, Chr22G001600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G635100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG057090, gene_TRIDC1BG065720 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G388400.1, TraesCS1B02G415800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb295490_P001, Zm00001eb430230_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13705, nbis-gene-24895 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g27358, Zma_g28774 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.48, evm.TU.LG04.702, evm.TU.LG18.1855 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g10650 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.233 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29473 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2416 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20911 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.142 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015964 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5955 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16890 |
| Salicaceae | Populus euphratica | 2 | populus_peu10065, populus_peu18182 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621261 |
| Solanaceae | Solanum chilense | 1 | SOLCI004349100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011001 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22313_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2118 |
| Zosteraceae | Zostera marina | 1 | Zosma04g08490.v3.1 |