Basic Information
Locus ID:
COCNU_06G005220
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Protein of unknown function (DUF1639)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 14050638 | 14062598 | + | COCNU_06G005220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 52,412.16 Da | 53.77 | 64.85 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14686 | bZIP | 320 | 364 | 0.00228243 | - |
| Pfam | PF07797 | Protein of unknown function (DUF1639) | 268 | 317 | 5.7E-23 | IPR012438 |
| SUPERFAMILY | SSF50729 | PH domain-like | 359 | 458 | 1.31E-7 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 213 | - | - |
| Coils | Coil | Coil | 328 | 362 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23895.1 | Pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_008799581.2 | trinucleotide repeat-containing gene 18 protein-like isoform X2 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8K0IAA6 | Homeobox protein cut-like OS=Cocos nucifera OX=13894 GN=COCNU_06G005220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23562, jg7698 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15146 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003878 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g098770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24038, Sbi_jg7886 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12159 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010649 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52218, Sgl57490 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004303, gene:ENSEOMG00000023988 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5AG0005760 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G005220, COCNU_14G003430 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709541, gene-LOC103714194 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1974.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G33548 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G23895.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026064m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g21860.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g080860.2N, BniB03g013680.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0572 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0680 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g03310 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g12100 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12162 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1544 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028475 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08132, Lb2G13687 |
| Poaceae | Echinochloa crus-galli | 3 | BH05.1237, CH01.2734, CH05.1468 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0392410, gene-QOZ80_5BG0438780 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0095220.1 |
| Poaceae | Oryza coarctata | 2 | Oco09G018560, Oco10G018520 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g51710.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G261300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0200596, Pt_Chr0505947 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G016110, Chr06G016850 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G751800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG037210, gene_TRIDC1BG074430 |
| Poaceae | Triticum aestivum | 4 | TraesCS1A02G350700.1, TraesCS1B02G478900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb297840_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30212 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25903 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3268, evm.TU.LG10.111, evm.TU.LG16.333 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g05330 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.96 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18307 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8633 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.336 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018472 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10997 |
| Salicaceae | Populus euphratica | 2 | populus_peu03693, populus_peu34541 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132603801, gene-LOC132620383, gene-LOC132634778 |
| Solanaceae | Solanum chilense | 2 | SOLCI002348700, SOLCI006524800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005558, gene-LOC107027896 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.23324_chr05_-, gene_9672 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3075, TC06G0102 |
| Zosteraceae | Zostera marina | 1 | Zosma05g05480.v3.1 |