Basic Information
Locus ID:
COCNU_06G005200
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Receptor protein kinase CLAVATA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 14017906 | 14022521 | - | COCNU_06G005200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.23 | 108,713.86 Da | 34.18 | 100.78 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 338 | 396 | 1.1E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 267 | 326 | 3.6E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 703 | 970 | 5.6E-44 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 243 | 265 | 1.8 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 170 | 188 | 0.84 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 69 | 2.1E-7 | IPR013210 |
| SUPERFAMILY | SSF52047 | RNI-like | 77 | 399 | 8.63E-68 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 306 | 601 | 1.33E-50 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 697 | 975 | 1.01E-73 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 778 | 980 | 3.7E-60 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 337 | 627 | 5.2E-84 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 665 | 777 | 7.4E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 228 | 332 | 1.8E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 139 | 1.6E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 140 | 227 | 2.3E-21 | IPR032675 |
| SMART | SM00220 | serkin_6 | 700 | 979 | 1.1E-32 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 168 | 191 | 94.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 337 | 361 | 11.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 120 | 152 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 241 | 265 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 554 | 578 | 300.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 289 | 312 | 27.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 362 | 384 | 62.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 700 | 979 | 36.315205 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 822 | 834 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20270.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. | 0 |
| RefSeq | XP_010918071.1 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Elaeis guineensis] | 0 |
| O65440 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8K0IAI5 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Cocos nucifera OX=13894 GN=COCNU_06G005200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology