Basic Information
Locus ID:
COCNU_06G004800
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 12902048 | 12905167 | + | COCNU_06G004800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 38,569.24 Da | 38.22 | 83.31 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 75 | 148 | 7.6E-16 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 11 | 62 | 1.7E-10 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 64 | 271 | 4.38E-31 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 9 | 61 | 1.35E-15 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 5 | 63 | 2.3E-16 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 64 | 296 | 2.2E-40 | - |
| SMART | SM00220 | serkin_6 | 8 | 233 | 0.004 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 274 | 18.02581 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 29 | 41 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 95 | 107 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29180.3 | - | 0 |
| RefSeq | XP_029117353.1 | LOW QUALITY PROTEIN: probable LRR receptor-like serine/threonine-protein kinase At1g51820 [Elaeis guineensis] | 0 |
| C0LGR6 | Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana OX=3702 GN=At4g29180 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0IBP8 | Putative LRR receptor-like serine/threonine-protein kinase PAM74 OS=Cocos nucifera OX=13894 GN=COCNU_06G004800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_06G004800 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g08540.v2.2, SpUn1948_0010.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq02G0918, Ceq02G0924, Ceq02G0926, Ceq02G0935 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G0949, Cgl02G0953, Cgl02G0963 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14979 |