Basic Information
Locus ID:
COCNU_06G004790
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Carbohydrate-binding protein of the ER
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 12876961 | 12880949 | + | COCNU_06G004790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 37,699.46 Da | 43.42 | 83.37 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 249 | 333 | 4.9E-17 | IPR001245 |
| Pfam | PF12819 | Malectin-like domain | 1 | 108 | 4.3E-20 | IPR024788 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 227 | 336 | 4.29E-27 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 230 | 322 | 3.7E-29 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 247 | 338 | 14.84566 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 253 | 275 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29990.2 | - | 0 |
| RefSeq | XP_019702975.1 | probable LRR receptor-like serine/threonine-protein kinase At1g05700 [Elaeis guineensis] | 0 |
| C0LGG4 | Probable LRR receptor-like serine/threonine-protein kinase At1g51860 OS=Arabidopsis thaliana OX=3702 GN=At1g51860 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0IAX0 | Putative LRR receptor-like serine/threonine-protein kinase OS=Cocos nucifera OX=13894 GN=COCNU_06G004790 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag1G01379 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G004790 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0927 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0971 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g02930 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047034 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4BG061400 |
| Poaceae | Triticum aestivum | 1 | TraesCS4B02G367000.1 |