Basic Information
Locus ID:
COCNU_06G004150
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 11060038 | 11079892 | - | COCNU_06G004150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 93,099.90 Da | 53.79 | 75.68 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 692 | 726 | 0.031 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 79 | 314 | 3.31E-18 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 526 | 829 | 1.2E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 524 | 647 | 1.9E-34 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 78 | 321 | 8.9E-24 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 648 | 831 | 1.4E-60 | IPR015943 |
| SMART | SM00320 | WD40_4 | 590 | 629 | 5.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 688 | 726 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 645 | 684 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 790 | 829 | 26.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 10 | 309 | 0.0067 | IPR000719 |
| SMART | SM00320 | WD40_4 | 535 | 579 | 7.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 735 | 774 | 1.4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 695 | 729 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 695 | 735 | 11.678087 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 309 | 9.983564 | IPR000719 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 713 | 727 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 191 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.1 | SPA1-related 3. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA3 (and SPA4) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_010915966.2 | LOW QUALITY PROTEIN: protein SPA1-RELATED 4 [Elaeis guineensis] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IA95 | Protein SPA1-RELATED 3 OS=Cocos nucifera OX=13894 GN=COCNU_06G004150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology