Basic Information
Locus ID:
COCNU_06G003310
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
ATPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 9117197 | 9128959 | + | COCNU_06G003310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 82,111.61 Da | 46.62 | 89.56 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 458 | 591 | 2.05031E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 460 | 590 | 1.5E-37 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 613 | 655 | 1.3E-11 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 420 | 656 | 3.94E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 419 | 591 | 5.8E-94 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 592 | 661 | 5.8E-94 | - |
| SMART | SM00382 | AAA_5 | 456 | 593 | 1.8E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 563 | 582 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 686 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 680 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 382 | - | - |
| Coils | Coil | Coil | 651 | 671 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_029119969.1 | uncharacterized protein LOC105041713 isoform X2 [Elaeis guineensis] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0IB24 | Peroxisome biosynthesis protein PAS1 OS=Cocos nucifera OX=13894 GN=COCNU_06G003310 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology