Basic Information
Locus ID:
COCNU_06G002990
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 8397438 | 8412969 | - | COCNU_06G002990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 126,798.67 Da | 42.00 | 79.46 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 882 | 914 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 824 | 857 | 0.062 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 752 | 1015 | 3.36E-28 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 294 | 519 | 6.03E-8 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 291 | 555 | 3.7E-8 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 723 | 874 | 6.0E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 875 | 1018 | 1.8E-45 | IPR015943 |
| SMART | SM00320 | WD40_4 | 876 | 914 | 1.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 817 | 857 | 2.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 925 | 964 | 17.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 883 | 916 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 824 | 866 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 883 | 916 | 12.246197 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 901 | 915 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 29 | - | - |
| Coils | Coil | Coil | 586 | 613 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_029119751.1 | protein SPA1-RELATED 4 isoform X1 [Elaeis guineensis] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0IAJ8 | Protein SPA1-RELATED 4 OS=Cocos nucifera OX=13894 GN=COCNU_06G002990 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology