Basic Information
Locus ID:
COCNU_06G000070
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 166576 | 173463 | - | COCNU_06G000070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 34,969.04 Da | 45.89 | 89.48 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 51 | 102 | 5.57881E-21 | - |
| Pfam | PF12906 | RING-variant domain | 51 | 101 | 2.4E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 46 | 106 | 8.83E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 34 | 115 | 2.2E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 50 | 102 | 9.7E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 43 | 108 | 21.887127 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_010918233.1 | uncharacterized protein LOC105042613 [Elaeis guineensis] | 0 |
| TrEMBL | A0A8K0N1V0 | E3 ubiquitin-protein ligase MARCH8 OS=Cocos nucifera OX=13894 GN=COCNU_06G000070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology