Basic Information
Locus ID:
COCNU_05G010060
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RING-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 54914953 | 54915282 | + | COCNU_05G010060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 7,066.00 Da | 33.13 | 79.54 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12861 | Anaphase-promoting complex subunit 11 RING-H2 finger | 33 | 64 | 1.3E-4 | IPR024991 |
| SUPERFAMILY | SSF57850 | RING/U-box | 32 | 64 | 2.3E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 65 | 4.8E-10 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko04066 (HIF-1 signaling pathway)
map04066 (HIF-1 signaling pathway)
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20570.1 | RING-box 1. Encodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein. | 0 |
| RefSeq | XP_010936721.1 | RING-box protein 1a [Elaeis guineensis] | 0 |
| Q940X7 | RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N1R3 | Putative RING-box protein 1a OS=Cocos nucifera OX=13894 GN=COCNU_05G010060 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg31759, jg32867 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_5593, gene_6709 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah015084, Ah028771 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g169890 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg2032, Sbi_jg24671, Sbi_jg34473, Sbi_jg8531 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20063, Seu_jg2736 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002832, GOSA_00022736 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl42793, Sgl47546, Sgl73464, Sgl76984 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000006147, gene:ENSEOMG00000008875 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0016080, CQ.Regalona.r1.8BG0017210 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30119070, pistato.v30217960, pistato.v30260170 |
| Apiaceae | Apium graveolens | 1 | Ag5G00928 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G010060, scaffold021465G000020 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701991, gene-LOC103711519, gene-LOC120113304 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.624.V1.1, AsparagusV1_07.2901.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G18073, Ftri4G01090 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G42830.1, AT5G20570.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009688m.g.v1.0, Thhalv10015047m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g23910.v2.2, SpUn0007_0070.v2.2, SpUn0013_0100.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g042270.2N, BniB05g042950.2N, BniB08g010520.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0777 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno03g10980, gene.Cymno09g01350, gene.Cymno11g09960 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0066s00032.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g25780, gene.Thate09g19560 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.154, evm.TU.LG07.1325 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00001564, Pov_00001833, Pov_00001842, Pov_00004024 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17973 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.1109, AH07.3164, BH02.998, BH07.2995, CH02.1104 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0006490, gene-QOZ80_1BG0055210 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0218390.1, HORVU.MOREX.r3.6HG0607930.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_018934, gene-QYE76_049722 |
| Poaceae | Oryza coarctata | 3 | Oco02G000360, Oco03G019460, Oco04G020240 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g01700.1, LOC_Os02g47870.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G087500, gene-BS78_04G249100 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0205913, Pt_Chr0206472, Pt_Chr0206709 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G025370, Chr03G002750, Chr05G003110, Chr06G003980 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G001800, Tel6E01G502100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG003210, gene_TRIDC3BG000130 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G001800.1, TraesCS3B02G000800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb126700_P001, Zm00001eb188540_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-22089, nbis-gene-32343, nbis-gene-45820 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g16987, Zma_g7470, Zma_g9809 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG02.2454, evm.TU.LG12.1596, evm.TU.LG19.67 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g27240, gene.Posoc08g03970 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.577, evm.TU.Scaffold_4_RagTag.1010 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12936, nbisL1-mrna-6774 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12818, nbisL1-mrna-14674 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16966 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.656, evm.TU.utg000033l.405 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000502, Maker00015081 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3979 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8126 |
| Salicaceae | Populus euphratica | 2 | populus_peu02900, populus_peu33796 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132633526, gene-LOC132636921, gene-LOC132645335 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005489, gene-LOC107021447 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_530 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0471 |
| Zosteraceae | Zostera marina | 2 | Zosma05g13680.v3.1, Zosma05g13690.v3.1 |