HalophFGD

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Basic Information
Locus ID: COCNU_05G009860
Species & Taxonomic ID: Cocos nucifera & 13894
Genome Assembly: GCA_008124465.1
Description: isoform X1
Maps and Mapping Data
Chromosome Start End Strand ID
chr5 54503939 54533775 + COCNU_05G009860
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.27 147,630.86 Da 44.86 80.62 -0.38
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd05302 FDH 1014 1342 0.0 IPR033689
Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 1047 1325 5.7E-13 IPR006139
Pfam PF13450 NAD(P)-binding Rossmann-like domain 897 946 7.5E-5 -
Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 1121 1299 3.0E-51 IPR006140
SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 897 1001 1.48E-6 IPR036188
SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1114 1300 1.25E-52 IPR036291
SUPERFAMILY SSF52283 Formate/glycerate dehydrogenase catalytic domain-like 1046 1132 9.07E-31 -
Gene3D G3DSA:2.60.40.2700 - 752 831 1.2E-8 -
Gene3D G3DSA:3.40.50.720 - 1047 1339 3.2E-142 -
Gene3D G3DSA:3.40.50.720 - 1111 1301 3.2E-142 -
ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 1159 1186 - IPR029752
ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 1209 1231 - IPR029753
ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 1238 1254 - IPR029753
Hamap MF_03210 Formate dehydrogenase, mitochondrial. 1014 1343 52.70121 IPR033689
MobiDBLite mobidb-lite consensus disorder prediction 665 679 - -
MobiDBLite mobidb-lite consensus disorder prediction 516 530 - -
MobiDBLite mobidb-lite consensus disorder prediction 476 531 - -
MobiDBLite mobidb-lite consensus disorder prediction 660 680 - -
MobiDBLite mobidb-lite consensus disorder prediction 495 514 - -
MobiDBLite mobidb-lite consensus disorder prediction 1 29 - -
Coils Coil Coil 224 244 - -
Gene Ontology
Molecular Function:
GO:0008863 (formate dehydrogenase (NAD+) activity) GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor) GO:0051287 (NAD binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G14780.3 - 0
RefSeq XP_029123743.1 uncharacterized protein LOC105056295 isoform X1 [Elaeis guineensis] 0
Swiss-Prot Q07511 Formate dehydrogenase, mitochondrial OS=Solanum tuberosum OX=4113 GN=FDH1 PE=1 SV=2 0
TrEMBL A0A8K0I995 Formate dehydrogenase, mitochondrial OS=Cocos nucifera OX=13894 GN=COCNU_05G009860 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 1 jg17799
Aizoaceae Mesembryanthemum crystallinum 1 gene_12713
Amaranthaceae Atriplex hortensis 1 Ah030137
Amaranthaceae Salicornia bigelovii 2 Sbi_jg19126, Sbi_jg37548
Amaranthaceae Salicornia europaea 1 Seu_jg5389
Amaranthaceae Suaeda aralocaspica 1 GOSA_00012453
Amaranthaceae Suaeda glauca 4 Sgl22025, Sgl22142, Sgl27286, Sgl27400
Amaranthaceae Chenopodium album 3 gene:ENSEOMG00000005312, gene:ENSEOMG00000034761 ...
gene:ENSEOMG00000040269
Amaranthaceae Chenopodium quinoa 2 CQ.Regalona.r1.7AG0016150, CQ.Regalona.r1.7BG0019470
Anacardiaceae Pistacia vera 1 pistato.v30022270
Apiaceae Apium graveolens 1 Ag9G00485
Arecaceae Cocos nucifera 2 COCNU_05G009860, COCNU_13G000820
Arecaceae Phoenix dactylifera 3 gene-LOC103701979, gene-LOC103705850, gene-LOC120113313
Asparagaceae Asparagus officinalis 2 AsparagusV1_01.2782.V1.1, AsparagusV1_01.2783.V1.1
Asteraceae Flaveria trinervia 1 Ftri6G01021
Brassicaceae Arabidopsis thaliana 1 AT5G14780.1
Brassicaceae Eutrema salsugineum 2 Thhalv10012160m.g.v1.0, Thhalv10013803m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp3g30980.v2.2, Sp6g29260.v2.2
Brassicaceae Brassica nigra 2 BniB02g048000.2N, BniB05g023760.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq02G1055, Ceq02G1816
Casuarinaceae Casuarina glauca 2 Cgl02G1096, Cgl02G1895
Cymodoceaceae Cymodocea nodosa 1 gene.Cymno09g07720
Hydrocharitaceae Thalassia testudinum 1 gene.Thate03g03390
Malvaceae Hibiscus hamabo Siebold & Zucc. 5 nbisL1-mrna-10314, nbisL1-mrna-12307, nbisL1-mrna-6832 ...
nbisL1-mrna-6834, nbisL1-mrna-6835
Nitrariaceae Nitraria sibirica 1 evm.TU.LG05.389
Plantaginaceae Plantago ovata 1 Pov_00027872
Plumbaginaceae Limonium bicolor 2 Lb4G23151, Lb4G24158
Poaceae Echinochloa crus-galli 6 AH06.1462, AH07.3170, BH06.1477, BH07.3001, CH06.1614 ...
CH07.3076
Poaceae Eleusine coracana subsp. coracana 2 gene-QOZ80_6AG0520330, gene-QOZ80_6BG0472440
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.7HG0676800.1
Poaceae Lolium multiflorum 2 gene-QYE76_024678, gene-QYE76_029710
Poaceae Oryza coarctata 4 Oco11G008800, Oco11G008810, Oco11G008890, Oco12G008840
Poaceae Oryza sativa 2 LOC_Os06g29180.1, LOC_Os06g29220.1
Poaceae Paspalum vaginatum 2 gene-BS78_04G249800, gene-BS78_10G149700
Poaceae Puccinellia tenuiflora 2 Pt_Chr0403923, Pt_Chr0403963
Poaceae Sporobolus alterniflorus 2 Chr14G005670, Chr21G006380
Poaceae Thinopyrum elongatum 4 Tel4E01G022100, Tel4E01G022200, Tel6E01G502900 ...
Tel7E01G416900
Poaceae Triticum dicoccoides 6 gene_TRIDC4BG010280, gene_TRIDC5BG059530 ...
gene_TRIDC6AG042120, gene_TRIDC6BG049080, gene_TRIDC7AG029870, gene_TRIDC7BG020610
Poaceae Triticum aestivum 9 TraesCS4B02G066400.1, TraesCS4D02G007200.1 ...
TraesCS5D02G389600.1, TraesCS6A02G274900.1, TraesCS6B02G302400.2, TraesCS6D02G255200.2, TraesCS7A02G232200.1, TraesCS7B02G130600.1, TraesCS7D02G232300.1
Poaceae Zea mays 6 Zm00001eb053990_P001, Zm00001eb109380_P001 ...
Zm00001eb208450_P001, Zm00001eb222940_P002, Zm00001eb358390_P001, Zm00001eb382240_P001
Poaceae Zoysia japonica 1 nbis-gene-43776
Poaceae Zoysia macrostachya 1 Zma_g31862
Portulacaceae Portulaca oleracea 2 evm.TU.LG01.1362, evm.TU.LG14.649
Posidoniaceae Posidonia oceanica 1 gene.Posoc04g05210
Rhizophoraceae Bruguiera sexangula 3 evm.TU.Scaffold_6_RagTag.165, evm.TU.Scaffold_6_RagTag.168 ...
evm.TU.Scaffold_6_RagTag.170
Rhizophoraceae Carallia pectinifolia 1 nbisL1-mrna-14982
Rhizophoraceae Ceriops tagal 1 nbisL1-mrna-647
Rhizophoraceae Ceriops zippeliana 1 nbisL1-mrna-137
Rhizophoraceae Kandelia candel 1 evm.TU.utg000011l.115
Rhizophoraceae Kandelia obovata 1 Maker00006881
Rhizophoraceae Rhizophora apiculata 1 nbisL1-mrna-11859
Rhizophoraceae Rhizophora mangle 1 nbisL1-mrna-17434
Salicaceae Populus euphratica 1 populus_peu26953
Solanaceae Lycium barbarum 1 gene-LOC132621519
Solanaceae Solanum chilense 1 SOLCI003448200
Solanaceae Solanum pennellii 1 gene-LOC107011544
Tamaricaceae Reaumuria soongarica 2 STRG.23210_chr05_-, gene_13828
Tamaricaceae Tamarix chinensis 1 TC01G2232
Zosteraceae Zostera marina 1 Zosma06g07210.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.