Basic Information
Locus ID:
COCNU_05G009360
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 53371595 | 53372824 | + | COCNU_05G009360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 44,990.57 Da | 48.51 | 95.84 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 1 | 34 | 3.54156E-18 | - |
| Pfam | PF04564 | U-box domain | 1 | 59 | 1.9E-14 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 153 | 387 | 9.15E-21 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 64 | 3.81E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 61 | 1.9E-20 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 78 | 385 | 5.6E-18 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 1 | 54 | 2.4E-17 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1 | 61 | 28.069172 | IPR003613 |
| Coils | Coil | Coil | 328 | 348 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_010936891.1 | U-box domain-containing protein 21 [Elaeis guineensis] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0I914 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_05G009360 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology