Basic Information
Locus ID:
COCNU_05G009000
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 52464494 | 52467127 | + | COCNU_05G009000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 99,422.53 Da | 51.72 | 102.13 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 101 | 139 | 0.00409046 | - |
| Pfam | PF13855 | Leucine rich repeat | 481 | 541 | 2.8E-8 | IPR001611 |
| Pfam | PF00931 | NB-ARC domain | 108 | 345 | 6.0E-55 | IPR002182 |
| SUPERFAMILY | SSF52058 | L domain-like | 413 | 845 | 9.69E-39 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 93 | 359 | 1.45E-48 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 87 | 252 | 4.9E-25 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 445 | 609 | 3.6E-26 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 256 | 347 | 6.9E-15 | IPR042197 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 610 | 848 | 1.2E-16 | IPR032675 |
| SMART | SM00382 | AAA_5 | 118 | 260 | 3.5E-4 | IPR003593 |
| SMART | SM00369 | LRR_typ_2 | 505 | 527 | 92.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 528 | 551 | 0.29 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 530 | 551 | 7.057395 | IPR001611 |
| PRINTS | PR00364 | Disease resistance protein signature | 503 | 519 | 1.6E-18 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 290 | 304 | 1.6E-18 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 121 | 136 | 1.6E-18 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 193 | 207 | 1.6E-18 | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26090.1 | NB-ARC domain-containing disease resistance protein. Encodes a plasma membrane protein with leucine-rich repeat, leucine zipper, and P loop domains that confers resistance to Pseudomonas syringae infection by interacting with the avirulence gene avrRpt2. RPS2 protein interacts directly with plasma membrane associated protein RIN4 and this interaction is disrupted by avrRpt2. | 0 |
| RefSeq | XP_010937022.1 | disease resistance protein RPS2-like [Elaeis guineensis] | 0 |
| Q42484 | Disease resistance protein RPS2 OS=Arabidopsis thaliana OX=3702 GN=RPS2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0N2E0 | Disease resistance protein RPS2-like OS=Cocos nucifera OX=13894 GN=COCNU_05G009000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology