Basic Information
Locus ID:
COCNU_05G008940
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
CMT1
Description:
DNA (cytosine-5)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 52255735 | 52264407 | - | COCNU_05G008940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 84,265.00 Da | 37.48 | 79.59 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 251 | 306 | 1.47515E-30 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 316 | 429 | 1.7E-16 | IPR001525 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 645 | 708 | 2.1E-12 | IPR001525 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 508 | 546 | 1.8E-4 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 254 | 307 | 3.3E-10 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 144 | 551 | 9.16E-61 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 242 | 315 | 1.15E-13 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 557 | 709 | 4.03E-24 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 474 | 537 | 5.1E-16 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 87 | 438 | 5.9E-155 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 542 | 675 | 5.6E-49 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 1 | 86 | 4.9E-21 | IPR043151 |
| SMART | SM00298 | chromo_7 | 251 | 310 | 7.0E-8 | IPR000953 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 252 | 305 | 12.105 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 143 | 716 | 43.242142 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 1 | 109 | 9.790014 | IPR001025 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 322 | 334 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 275 | 295 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 144 | 160 | 1.0E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 365 | 379 | 1.0E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 411 | 424 | 1.0E-11 | IPR001525 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_010936992.1 | DNA (cytosine-5)-methyltransferase CMT3 [Elaeis guineensis] | 0 |
| A0A0P0VUY4 | DNA (cytosine-5)-methyltransferase CMT1 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8K0IAF8 | DNA (Cytosine-5)-methyltransferase CMT3 OS=Cocos nucifera OX=13894 GN=COCNU_05G008940 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology