Basic Information
Locus ID:
COCNU_05G008050
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 49972124 | 49978733 | + | COCNU_05G008050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 135,716.77 Da | 41.80 | 72.98 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 979 | 1214 | 1.43736E-88 | - |
| CDD | cd06410 | PB1_UP2 | 167 | 263 | 2.31918E-42 | - |
| Pfam | PF00564 | PB1 domain | 180 | 264 | 2.6E-18 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 975 | 1188 | 6.5E-52 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 961 | 1203 | 8.73E-67 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 179 | 270 | 3.26E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 956 | 1216 | 2.3E-67 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 182 | 266 | 1.1E-11 | - |
| SMART | SM00666 | PB1_new | 178 | 265 | 1.5E-29 | IPR000270 |
| SMART | SM00220 | serkin_6 | 973 | 1230 | 3.9E-48 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 973 | 1231 | 37.813408 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 979 | 1000 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1097 | 1109 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 530 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79570.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_010937270.1 | uncharacterized protein LOC105056675 isoform X2 [Elaeis guineensis] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0I9U8 | Phox/Bem1p OS=Cocos nucifera OX=13894 GN=COCNU_05G008050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology