Basic Information
Locus ID:
COCNU_05G007630
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
EFTS
Description:
Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 48871432 | 48881566 | + | COCNU_05G007630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 166,121.16 Da | 41.51 | 81.62 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14275 | UBA_EF-Ts | 821 | 857 | 1.45812E-17 | - |
| CDD | cd14275 | UBA_EF-Ts | 582 | 618 | 5.93535E-17 | - |
| CDD | cd02396 | PCBP_like_KH | 1393 | 1465 | 1.61664E-12 | - |
| CDD | cd02396 | PCBP_like_KH | 1308 | 1358 | 6.25108E-11 | - |
| Pfam | PF00889 | Elongation factor TS | 630 | 773 | 1.0E-29 | IPR014039 |
| Pfam | PF00013 | KH domain | 1393 | 1464 | 2.0E-7 | IPR004088 |
| Pfam | PF00013 | KH domain | 1309 | 1356 | 1.5E-7 | IPR004088 |
| Pfam | PF00575 | S1 RNA binding domain | 11 | 81 | 3.5E-15 | IPR003029 |
| Pfam | PF00889 | Elongation factor TS | 871 | 1012 | 1.5E-28 | IPR014039 |
| Pfam | PF00575 | S1 RNA binding domain | 128 | 190 | 1.3E-9 | IPR003029 |
| Pfam | PF00013 | KH domain | 1184 | 1251 | 1.0E-10 | IPR004088 |
| Pfam | PF00013 | KH domain | 1087 | 1140 | 3.7E-9 | IPR004088 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 121 | 199 | 8.21E-14 | IPR012340 |
| SUPERFAMILY | SSF46934 | UBA-like | 578 | 631 | 2.23E-17 | IPR009060 |
| SUPERFAMILY | SSF54791 | Eukaryotic type KH-domain (KH-domain type I) | 1386 | 1470 | 8.92E-10 | IPR036612 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 12 | 93 | 1.42E-20 | IPR012340 |
| SUPERFAMILY | SSF54791 | Eukaryotic type KH-domain (KH-domain type I) | 1303 | 1357 | 2.64E-8 | IPR036612 |
| SUPERFAMILY | SSF54791 | Eukaryotic type KH-domain (KH-domain type I) | 1181 | 1258 | 7.75E-14 | IPR036612 |
| SUPERFAMILY | SSF46934 | UBA-like | 818 | 869 | 2.13E-17 | IPR009060 |
| SUPERFAMILY | SSF54791 | Eukaryotic type KH-domain (KH-domain type I) | 1082 | 1139 | 1.03E-10 | IPR036612 |
| SUPERFAMILY | SSF54713 | Elongation factor Ts (EF-Ts), dimerisation domain | 632 | 773 | 2.22E-43 | IPR036402 |
| SUPERFAMILY | SSF54713 | Elongation factor Ts (EF-Ts), dimerisation domain | 871 | 1012 | 1.24E-44 | IPR036402 |
| Gene3D | G3DSA:3.30.310.210 | - | 1306 | 1471 | 5.4E-25 | - |
| Gene3D | G3DSA:3.30.479.20 | Elongation factor Ts, dimerisation domain | 874 | 1011 | 1.5E-48 | IPR036402 |
| Gene3D | G3DSA:1.10.286.20 | - | 926 | 970 | 1.5E-48 | - |
| Gene3D | G3DSA:3.30.310.210 | - | 1083 | 1261 | 1.4E-30 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 815 | 870 | 4.2E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 577 | 630 | 8.2E-24 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 5 | 87 | 1.0E-23 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 115 | 202 | 2.1E-14 | - |
| Gene3D | G3DSA:3.30.479.20 | Elongation factor Ts, dimerisation domain | 635 | 772 | 4.2E-48 | IPR036402 |
| Gene3D | G3DSA:1.10.286.20 | - | 687 | 731 | 4.2E-48 | - |
| SMART | SM00322 | kh_6 | 1390 | 1469 | 1.0E-6 | IPR004087 |
| SMART | SM00316 | S1_6 | 10 | 81 | 1.3E-22 | IPR022967 |
| SMART | SM00322 | kh_6 | 1083 | 1166 | 9.1E-4 | IPR004087 |
| SMART | SM00322 | kh_6 | 1305 | 1377 | 0.025 | IPR004087 |
| SMART | SM00322 | kh_6 | 1181 | 1256 | 3.4E-6 | IPR004087 |
| SMART | SM00316 | S1_6 | 128 | 198 | 1.1E-18 | IPR022967 |
| TIGRFAM | TIGR00116 | tsf: translation elongation factor Ts | 578 | 672 | 6.0E-33 | IPR001816 |
| TIGRFAM | TIGR00116 | tsf: translation elongation factor Ts | 667 | 790 | 6.4E-31 | IPR001816 |
| TIGRFAM | TIGR00116 | tsf: translation elongation factor Ts | 815 | 916 | 6.2E-35 | IPR001816 |
| ProSiteProfiles | PS50084 | Type-1 KH domain profile. | 1182 | 1251 | 14.109903 | - |
| ProSiteProfiles | PS50084 | Type-1 KH domain profile. | 1084 | 1151 | 11.699136 | - |
| ProSiteProfiles | PS50084 | Type-1 KH domain profile. | 1306 | 1376 | 11.573357 | - |
| ProSiteProfiles | PS50126 | S1 domain profile. | 130 | 198 | 18.581228 | IPR003029 |
| ProSiteProfiles | PS50126 | S1 domain profile. | 12 | 81 | 21.978516 | IPR003029 |
| ProSiteProfiles | PS50084 | Type-1 KH domain profile. | 1391 | 1464 | 11.53143 | - |
| ProSitePatterns | PS01126 | Elongation factor Ts signature 1. | 587 | 602 | - | IPR018101 |
| ProSitePatterns | PS01127 | Elongation factor Ts signature 2. | 651 | 661 | - | IPR018101 |
| ProSitePatterns | PS01126 | Elongation factor Ts signature 1. | 826 | 841 | - | IPR018101 |
| Hamap | MF_00050 | Elongation factor Ts [tsf]. | 578 | 790 | 40.521118 | IPR001816 |
| Hamap | MF_00050 | Elongation factor Ts [tsf]. | 815 | 1023 | 35.860878 | IPR001816 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 811 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 393 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29060.1 | elongation factor Ts family protein. | 0 |
| RefSeq | XP_010937186.1 | uncharacterized protein LOC105056625 [Elaeis guineensis] | 0 |
| A2ZLC1 | Polyprotein of EF-Ts, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=PETs PE=3 SV=1 | 0 | |
| TrEMBL | A0A8K0I9L9 | Elongation factor Ts, mitochondrial OS=Cocos nucifera OX=13894 GN=EFTS PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15501, jg33837 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9100 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014585 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g196900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25014, Sbi_jg8868 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19736 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007769, GOSA_00007770 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42256, Sgl47032 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009631, gene:ENSEOMG00000033644 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0019800, CQ.Regalona.r1.8BG0022580 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30256850 |
| Apiaceae | Apium graveolens | 1 | Ag10G01520 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G007630 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702876 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2252.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri4G02403, Ftri8G29592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024316m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g27000.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g083910.2N, BniB05g007220.2N, BniB05g008470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0865 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0995 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02550 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0078s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g16210 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1118 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003868 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G29558, Lb6G30757 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3682, BH05.3703, CH05.3888 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0393080, gene-QOZ80_5BG0441360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0444900.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_001962 |
| Poaceae | Oryza coarctata | 2 | Oco23G007930, Oco24G007530 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g35630.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G089800, gene-BS78_K022400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703772 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G016580, Chr19G009600, Chr27G006830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G182200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG015330, gene_TRIDC5BG016440 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G093200.1, TraesCS5B02G099300.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb078330_P001, Zm00001eb091120_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30276 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25943 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2494, evm.TU.LG10.1532 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g07330 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1927 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25648 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17578 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-10199, nbisL1-mrna-21839, nbisL1-mrna-4696 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1099 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000095 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14783 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1210 |
| Salicaceae | Populus euphratica | 1 | populus_peu21951 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603424 |
| Solanaceae | Solanum chilense | 1 | SOLCI006671800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025533 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11808, gene_9320 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1437 |
| Zosteraceae | Zostera marina | 1 | Zosma05g02340.v3.1 |