Basic Information
Locus ID:
COCNU_05G007000
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
ubiquitin protein ligase binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 45540950 | 45542322 | + | COCNU_05G007000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.91 | 12,837.82 Da | 54.56 | 79.00 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 22 | 55 | 3.4E-7 | IPR016159 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 14 | 56 | 1.9E-9 | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69670.1 | cullin 3B. cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification. | 0 |
| RefSeq | XP_010937090.1 | cullin-3A isoform X2 [Elaeis guineensis] | 0 |
| Q9C9L0 | Cullin-3B OS=Arabidopsis thaliana OX=3702 GN=CUL3B PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0I9M2 | Cullin domain-containing protein OS=Cocos nucifera OX=13894 GN=COCNU_05G007000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_05G007000 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0079 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0070 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g08770 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-132 |
| Salicaceae | Populus euphratica | 1 | populus_peu21334 |